Peak Called Data

Peak called data (ChIP, ATAC etc.)

It is currently assumed that your peak called data has already been peak called by an external program such as MACS.

This is a very simple script that converts the peaks called by such a program into the binary format that is expected by ChromHMM. Make sure your input bed file for this script is of the format specified here.

All that is really required is the chromosome, start and end fields. Just ensure that these fields are indeed corresponding with the called peaks and not something else.